A selection of journal articles written by faculty in the College of the Pacific - Department of Biological Sciences at University of the Pacific.

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Submissions from 2018

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Frequency dependence shapes the adaptive landscape of imperfect Batesian mimicry, Susan D. Finkbeiner, Patricio Salazar, Sofía Nogales, Cassidi E. Rush, Adriana D. Briscoe, Ryan I. Hill, Marcus Kronforst, Keith Willmott, and Sean P. Mullen

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Testing the adaptive hypothesis of Batesian mimicry among hybridizing North American admiral butterflies: BATESIAN MIMICRY, Evan B. Kristiansen, Susan D. Finkbeiner, Ryan I. Hill, Louis Prusa, and Sean P. Mullen

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Synthesis of nucleobase-neomycin conjugates and evaluation of their DNA binding, cytotoxicities, and antibacterial properties, Siwen Wang, Mandeep Singh, Mingheng Ling, Danni Li, Krege Christison, Joan Lin-Cereghino, Geoff P. Lin-Cereghino, and Liang Xue

Aristaless controls butterfly wing color variation used in mimicry and mate choice, E. Westerman, N. VanKuren, D. Massardo, A. Tenger-Trolander, W. Zhang, Ryan I. Hill, M. Perry, E. Bayala, K. Barr, N. Chamberlain, T. E. Douglas, N. Buerkle, S. Palmer, and M. R. Kronforst

Submissions from 2017

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Structural characterization of the α-mating factor prepro-peptide for secretion of recombinant proteins in Pichia pastoris, Sabreen Chahal, Peter Wei, Pachai Moua, Sung Park, Janet Kwon, Arth Patel, Anthony Vu, Jason Catolico, Yu Tsai, Nadia Shaheen, Tiffany Chu, Vivian Tam, Zill-E-Huma Khan, Hyun Joo, Liang Xue, Joan Lin-Cereghino, Jerry Tsai, and Geoff P. Lin-Cereghino

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Interrelationships and diversification of Argynnis Fabricius and Speyeria Scudder butterflies, Robert S. De Moya, Wesley K. Savage, Chris Tenney, Xiaoshan Bao, Niklas Wahlberg, and Ryan I. Hill

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Seed germination in Viola pedunculata and Viola purpurea subsp. quercetorum (Violaceae), critical food plants for two rare butterflies, Sarah Franklin, Leanne B. Tran, Danish Farzad, and Ryan I. Hill

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Life History Descriptions of Adelpha naxia naxia and A. nea nea (Nymphalidae) From Costa Rica, Cassidi E. Rush and R. I. Hill

Submissions from 2016

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Auranofin inactivates Trichomonas vaginalis thioredoxin reductase and is effective against trichomonads in vitro and in vivo, Melissa Hopper, Jeong-fil Yun, Bianhua Zhou, Christine Le, Katelin Kehoe, Ryan Le, Ryan I. Hill, Gregg Jongeward, Anjan Debnath, Liangfang Zhang, Yukiko Miyamoto, Lars Eckmann, Kirkwood Land, and Lisa Wrischnik

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Differential secretion pathways of proteins fused to the Escherichia coli maltose binding protein (MBP) in Pichia pastoris, Pachai S. Moua, Alfonso Gonzalez, Kristin T. Oshiro, Vivian Tam, Zhiguo Harry Li, Jennifer Chang, Wilson Leung, Amy Yon, Der Thor, Sri Venkatram, Andreas H. Franz, Douglas D. Risser, Joan Lin-Cereghino, and Geoff P. Lin-Cereghino

Submissions from 2015

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Rapid diversification associated with ecological specialization in Neotropical Adelpha butterflies, Emily Ebel, Jeffrey Dacosta, Michael Sorenson, Ryan I. Hill, Adriana Briscoe, Keith Willmott, and Sean Mullen

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Population ecology of a California endemic: Speyeria adiaste clemencei, Khuram Zaman, Chris Tenney, Cassidi Rush, and Ryan I. Hill

Submissions from 2014

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Mutualistic Mimicry and Filtering by Altitude Shape the Structure of Andean Butterfly Communities, Nicolas Chazot, Keith R. Willmott, Paola G. Santacruz Endara, Alexandre Toporov, Ryan I. Hill, Chris D. Jiggins, and Marianne Elias

Life history and ecology of Speyeria adiaste clemencei (Comstock, 1925) (Lepidoptera: Nymphalidae), K. Zaman, Chris Tenney, M. Brunell, M. Chen, and Ryan I. Hill

Submissions from 2013

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Cryptic genetic and wing pattern diversity in a mimetic Heliconius butterfly, Ryan I. Hill, L. Gilbert, and M. Kronforst

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Mutant strains of Pichia pastoris with enhanced secretion of recombinant proteins, Sasha Larsen, Jun Weaver, Katherine de Sa Campos, Rhobe Bulahan, Jackson Nguyen, Heather Grove, Amy Huang, Lauren Low, Namphuong Tran, Seth Gomez, Jennifer Yau, Thomas Ilustrisimo, Jessica Kawilarang, Jonathan Lau, Maivi Tranphung, Irene Chen, Christina Tran, Marcia Fox, Joan Lin-Cereghino, and Geoff P. Lin-Cereghino

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The effect of α-mating factor secretion signal mutations on recombinant protein expression in Pichia pastoris., Geoff P. Lin-Cereghino, Carolyn Stark, Daniel Kim, Jennifer Chang, Nadia Shaheen, Hansel Poerwanto, Kimiko Agari, Pachai Moua, Lauren Low, Namphuong Tran, Amy Huang, Maria Nattestad, Kristin Oshiro, John Chang, Archana Chavan, Jerry Tsai, and Joan Lin-Cereghino

Submissions from 2012

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Conserved C-terminal domain of spider tubuliform spidroin 1 contributes to extensibility in synthetic fibers, Eric Gnesa, Yang Hsia, Jeffery Yarger, Warner Weber, Joan Lin-Cereghino, Geoff P. Lin-Cereghino, Simon Tang, Kimiko Agari, and Craig Vierra

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Ecologically relevant cryptic species in the highly polymorphic Amazonian butterfly Mechanitis mazaeus s.l. (Lepidoptera: Nymphalidae; Ithomiini), Ryan I. Hill, Marianne Elias, Kanchon Dasmahapatra, Chris Jiggins, Victor Koong, Keith Willmott, and James Mallet

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Diversification of complex butterfly wing patterns by repeated regulatory evolution of a Wnt ligand, Arnaud Martin, Riccardo Papa, Nicola Nadeau, Ryan I. Hill, Brian Counterman, Georg Halder, Chris Jiggins, Marcus Kronforst, Anthony Long, W. McMillan, and Robert Reed

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Analysis of the 5' untranslated region (5'UTR) of the alcohol oxidase 1 (AOX1) gene in recombinant protein expression in Pichia pastoris, Chris A. Staley, Amy Huang, Maria Nattestad, Kristin T. Oshiro, Laura E. Ray, Tejas Mulye, Zhiguo Harry Li, Thu Le, Justin J. Stephens, Seth R. Gomez, Allison D. Moy, Jackson C. Nguyen, Andreas H. Franz, Joan Lin-Cereghino, and Geoff P. Lin-Cereghino

Submissions from 2011

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Comparative population genetics of a mimicry locus among hybridizing Heliconius butterfly species, N. L. Chamberlain, Ryan I. Hill, S. W. Baxter, C. D. Jiggins, and M. R. Kronforst

Submissions from 2010

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Mitochondrial DNA barcoding detects some species that are real, and some that are not, Kanchon K. Dasmahapatra, Marianne Elias, Ryan I. Hill, Joseph I. Hoffman, and James Mallet

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Vertical distribution, flight behavior, and evolution of wing morphology in Morpho butterflies, P. J. DeVries, Carla M. Penz, and Ryan I. Hill

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Habitat segregation among mimetic ithomiine butterflies (Nymphalidae), Ryan I. Hill

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Secretion and proteolysis of heterologous proteins fused to the Escherichia coli maltose binding protein, Zhiguo Li, Wilson Leung, Amy Yon, John Nguyen, Vincent C. Perez, Jane Vu, William Giang, Linda T. Luong, Tracy Phan, Kate A. Salazar, Seth R. Gomez, Colin Au, Fan Xiang, David W. Thomas, Andreas H. Franz, Joan Lin-Cereghino, and Geoff P. Lin-Cereghino

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Secretion and proteolysis of heterologous proteins fused to the Escherichia coli maltose binding protein in Pichia pastoris., Zhiguo Li, Wilson Leung, Amy Yon, John Nguyen, Vincent Perez, Jane Vu, William Giang, Linda Luong, Tracy Phan, Katherine Salazar, Seth Gomez, Colin Au, Fan Xiang, David Thomas, Andreas H. Franz, Joan Lin-Cereghino, and Geoff P. Lin-Cereghino

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An improved method for enhanced production and biological activity of human secretory leukocyte protease inhibitor (SLPI) in Pichia pastoris, Zhiguo Li, Allison Moy, Seth R. Gomez, Andreas H. Franz, Joan Lin-Cereghino, and Geoff P. Lin-Cereghino

Submissions from 2009

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Polymorphic butterfly reveals the missing link in ecological speciation, N. L. Chamberlain, Ryan I. Hill, L. E. Gilbert, D. D. Kapan, and M. R. Kronforst

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The immature stages and natural history of Veladyris pardalis (Salvin, 1869) in eastern Ecuador (Lepidoptera, Nymphalidae, Ithomiinae), H. F. Greeney, Ryan I. Hill, M. R. Hualinga, W. R. Simbana, and G. Gentry

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Expression and characterization of recombinant human secretory leukocyte protease inhibitor (SLPI) protein from Pichia pastoris, Zhiguo Li, Allison Moy, Kirti Sohal, Carolyn Dam, Peter Kuo, James Whittaker, Mei Whittaker, Nejat Düzgünes, Krystyna Konopka, Andreas H. Franz, Joan Lin-Cereghino, and Geoff P. Lin-Cereghino

Submissions from 2008

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Promoter library designed for fine-tuned gene expression in Pichia pastoris, Franz S. Hartner, Claudia Ruth, David Langenegger, Sabrina N. Johnson, Petr Hyka, Geoff P. Lin-Cereghino, Joan Lin-Cereghino, Karin Kovar, James Cregg, and Anton Glieder

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Description of the immature stages of Methona confusa confusa Butler, 1873 and Methona curvifascia Weymer, 1883 (Nymphalidae, Ithomiinae) from eastern Ecuador, Ryan I. Hill and Luis A. Tipan

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Direct selection of Pichia pastoris expression strains using new G418 resistance vectors, Joan Lin-Cereghino, Matthew Hashimoto, Allison Moy, James Castelo, Claire Orazem, Peter Kuo, See Xiong, Vishal Gandhi, Christopher Hatae, Alex Chan, and Geoff P. Lin-Cereghino

Submissions from 2007

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Limited performance of DNA barcoding in a diverse community of tropical butterflies, Marianne Elias, Ryan I. Hill, Keith R. Willmott, Kanchon K. Dasmahapatra, Andrew V. Z. Brower, James Mallet, and Chris D. Jiggins

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Vectors and strains for expression., Joan Lin-Cereghino and Geoff P. Lin-Cereghino

Submissions from 2006

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Life history and biology of Forbestra olivencia (Ithomiinae, Nymphalidae), Ryan I. Hill

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Opportunities for research at field stations in Ecuador, Ryan I. Hill

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Mxr1p, a Key Regulator of the Methanol Utilization Pathway and Peroxisomal Genes in Pichia pastoris, Geoff P. Lin-Cereghino, Laurie Godfrey, Bernard J. de la Cruz, Sabrina Johnson, Samone Khuongsathiene, Ilya Tolstorukov, Mingda Yan, Joan Lin-Cereghino, Marten Veenhuis, Suresh Subramani, and James Cregg

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Preparation of the Yeast Pichia pastoris for Transmission Electron Microscopy., Benjamin Yount, Joan Lin-Cereghino, Geoff P. Lin-Cereghino, and Marcia Fox

Submissions from 2005

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Diet: Charina bottae, T. J. Devitt, Ryan I. Hill, and S. E. Cameron

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Condensed protocol for competent cell preparation and transformation of the methylotrophic yeast Pichia pastoris, Joan Lin-Cereghino, William Wong, See Xiong, William Giang, Linda Luong, Jane Vu, Sabrina Johnson, and Geoff P. Lin-Cereghino

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Cloning and characterization of the Pichia pastoris MET2 gene as a selectable marker, Der Thor, See Xiong, Claire C. Orazem, An-Chun Kwan, James Cregg, Joan Lin-Cereghino, and Geoff P. Lin-Cereghino

Submissions from 2004

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Differential wing strength in Pierella butterflies (Nymphalidae, Satyrinae) supports the deflection hypothesis, Ryan I. Hill and Jarol F. Vaca

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Temperature-dependent oxygen limitation in insect eggs, H. Arthur Woods and Ryan I. Hill

Submissions from 2003

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Notes on the life history of Asterope markii Hewitson, 1857 (Nymphalidae), Ryan I. Hill

Submissions from 2002

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Phylogenetic analysis and review of Panacea and Batesia butterflies (Nymphalidae), Ryan I. Hill, Carla M. Penz, and P. J. DeVries

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Production of recombinant proteins in fermenter cultures of the yeast Pichia pastoris, Geoff P. Lin-Cereghino, Joan Lin-Cereghino, Christine Ilgen, and James Cregg

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Expression of Foreign Genes in the yeast Pichia pastoris, Geoff P. Lin-Cereghino, Anthony Sunga, Joan Lin-Cereghino, and James Cregg

Submissions from 2001

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Pichia pastoris Pex14p, a phosphorylated peroxisomal membrane protein, is part of a PTS–receptor docking complex and interacts with many peroxins, Monique Johnson, William Snyder, Joan Lin-Cereghino, Marten Veenhuis, Suresh Subramani, and James Cregg

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New selectable marker/auxotrophic host strain combinations for molecular genetic manipulation of Pichia pastoris., Geoff P. Lin-Cereghino, Joan Lin-Cereghino, Anthony Sunga, Monique Johnson, May Lim, Martina Gleeson, and James Cregg

Submissions from 2000

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Recombinant Protein Expression in Pichia pastoris, James Cregg, Joan Lin-Cereghino, Jianying Shi, and David Higgins

Ecuadorian Birds: Nesting records and egg descriptions from a lowland tropical rainforest, Ryan I. Hill and H. F. Greeney

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Heterologous protein expression in the methylotrophic yeast Pichia pastoris, Joan Lin-Cereghino and James Cregg

Submissions from 1999

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1,4-Benzoquinone Reductase from Phanerochaete chrysosporium: cDNA Cloning and Regulation of Expression, Lakshmi Akileswaran, Barry Brock, Joan Lin-Cereghino, and Michael Gold

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Positive Selection of Novel Peroxisome Biogenesis-Defective Mutants of the Yeast Pichia pastoris, Monique A. Johnson, Hans R. Waterham, Galyna P. Ksheminska, Liubov R. Fayura, Joan Lin-Cereghino, Oleh V. Stasyk, Marten Veenhuis, Aleksander R. Kulachkovsky, Andrei A. Sibirny, and James Cregg

Submissions from 1997

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Endosome to Golgi Retrieval of the Vacuolar Protein Sorting Receptor, Vps10p, Requires the Function of the VPS29, VPS30, and VPS35 Gene Products, Matthew N. J. Seaman, Eric G. Marcusson, Joan Lin-Cereghino, and Scott D. Emr

Submissions from 1995

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The cytoplasmic tail domain of the vacuolar protein sorting receptor Vps10p and a subset of VPS gene products regulate receptor stability, function, and localization, Joan Lin-Cereghino, Eric G. Marcusson, and Scott D. Emr

Submissions from 1994

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Isolation and Characterization of DNA-Binding Mutants of a Plasmid Replication Initiation Protein Utilizing an in Vivo Binding Assay, Joan Lin-Cereghino, Donald R. Helinski, and Aresa E. Toukdarian

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The sorting receptor for yeast vacuolar carboxypeptidase Y is encoded by the VPS10 gene, Eric Marcusson, Bruce Horazdovsky, Joan Lin-Cereghino, Editte Gharakhanian, and Scott Emr

Submissions from 1993

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The essentiality of the three carboxy-terminal amino acids of the plasmid RK2 replication initiation protein TrfA for DNA-binding and replication activity, Joan Lin-Cereghino and Donald R. Helinski

Submissions from 1992

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Analysis of mutations in trfA, the replication initiation gene of the broad-host-range plasmid RK2, Joan Lin-Cereghino and Donald R. Helinski

Submissions from 1989

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Cellular gene expression in papillomas of the choroid plexus from transgenic mice that express the simian virus 40 large T antigen, Jeffrey R. Marks, Joan Lin-Cereghino, Philip Hinds, Douglas Miller, and Arnold J. Levine

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Utilization of luciferase fusion genes to monitor differential regulation of phytohemagglutinin and phaseolin promoters in transgenic tobacco, C. D. Riggs, D. C. Hunt, Joan Lin-Cereghino, and M. J. Chrispeels

Submissions from 1988

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Neutral amino acid transport systems in animal cells: potential targets of oncogene action and regulators of cellular growth, Milton H. Saier Jr., Gregory A. Daniels, Paula Boerner, and Joan Lin-Cereghino