A selection of published journal articles from faculty members of the School of Engineering and Computer Science at University of the Pacific.

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Submissions from 2016

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Development of a Multi-Objective Evolutionary Algorithm for Strain-Enhanced Quantum Cascade Lasers, David Mueller and Gregory Triplett

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PSMA targeted docetaxel-loaded superparamagnetic iron oxide nanoparticles for prostate cancer., Prashanth K. B. Nagesh, Nia R. Johnson, Vijaya K. N. Boya, Pallabita Chowdhury, Shadi F. Othman, Vahid Khalilzad-Sharghi, Bilal B. Hafeez, Aditya Ganju, Sheema Khan, Stephen W. Behrman, Nadeem Zafar, Subhash C. Chauhan, Meena Jaggi, and Murali M. Yallapu

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25+ years of the hubble space telescope and a simple error that cost millions, Said Shakerin

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Angle of repose, Said Shakerin

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Drops in 2D, Said Shakerin

Submissions from 2015

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Underwater sound transmission through arrays of disk cavities in a soft elastic medium., David C. Calvo, Abel L. Thangawng, Christopher N. Layman, Riccardo Casalini, and Shadi F. Othman

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ABET Accreditation of Undergraduate Engineering Management Programs: Established Versus New Programs—The Similarities and Differences, Abel A. Fernandez

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Team-Based Methods To Analyze High-Technology Production Systems, Abel A. Fernandez, Derya A. Jacobs, and Charles B. Keating

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A Model for Allocating Resources to Research Programs by Evaluating Technical Importance and Research Productivity, Abel A. Fernandez, P. Kauffmann, Charles B. Keating, and R. Unal

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Use of Stereoscopic Virtual Reality for Online Atmospheric Nucleation Research and Education, Jinzhu Gao, Logan Herche, Zeshawn Shaheen, Michael Morelli, and Dehui Qiu

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Flow of DNA solutions in a microfluidic gradual contraction, Shelly Gulati, Susan J. Muller, and Dorian Liepmann

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Leveraging the Social Aspect of Educational Games, Osvaldo Jimenez

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Design and Fabrication of an MRI-Compatible, Autonomous Incubation System, Vahid Khalilzad-Sharghi and Huihui Xu

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A forecast model for deep penetration of renewables in the Southwest, South Central, and Southeast regions of the United States, Rahim Khoie and V. Lee

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Wind turbine rotor fragments: impact probability and setback evaluation, Scott M. Larwood and C. P. Van Dam

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Efficient Level of Detail for Texture-Based Flow Visualization, Daying Lu, Dengming Zhu, Zhaoqi Wang, and Jinzhu Gao

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The e-incubator: a magnetic resonance imaging-compatible mini incubator., Shadi F. Othman, Karin Wartella, Vahid Khalilzad-Sharghi, and Huihui Xu

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Future role of MR elastography in tissue engineering and regenerative medicine., Shadi F. Othman, Huihui Xu, and Jeremy J. Mao

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Subjective versus objective: classifying analytical models for productive heterogeneous performance prediction, Vivek K. Pallipuram, Melissa C. Smith, Nilim Sarma, Ranajeet Anand, Edwin Weill, and Karan Sapra

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Multi-modal imaging for assessment of tissue-engineered bone in a critical-sized calvarial defect mouse model., K. A. Wartella, Vahid Khalilzad-Sharghi, M. L. Kelso, J. L. Kovar, D. L. Kaplan, Huihui Xu, and Shadi F. Othman

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Implications of protein corona on physico-chemical and biological properties of magnetic nanoparticles., Murali M. Yallapu, Neeraj Chauhan, Shadi F. Othman, Vahid Khalilzad-Sharghi, Mara C. Ebeling, Sheema Khan, Meena Jaggi, and Subhash C. Chauhan

Submissions from 2014

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Fog water as an alternative and sustainable water resource, Mary Kay Camarillo, William T. Stringfellow, J. K. Domen, and Shelly Gulati

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Fog water as an alternative and sustainable water resource, Jeremy K. Domen, William T. Stringfellow, Mary K. Camarillo, and Shelly Gulati

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Enveloped Virus Flocculation and Removal in Osmolyte Solutions, Maria Gencoglu and Caryn Heldt

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Enveloped Virus Flocculation and Removal in Osmolyte Solutions, Maria Gencoglu and Caryn L. Heldt

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Porcine Parvovirus Flocculation and Removal in the Presence of Protecting Osmolytes, Maria Gencoglu, Caryn L. Heldt, and Eric Pearson

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Porcine Parvovirus Flocculation and Removal in the Presence of Protecting Osmolytes, Maria Gencoglu, Caryn Heldt, and Eric Pearson

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Biocompatibility of Soft-templated Mesoporous Carbons, Maria Gencoglu, Amanda Spurri, Mitchell Franko, Jihua Chen, Dale Hensley, Caryn Heldt, and Dipendu Saha

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Biocompatibility of Soft-templated Mesoporous Carbons, Maria Gencoglu, Amanda Spurri, Mitchell Franko, Jihua Chen, Dale K. Hensley, Caryn L. Heldt, and Dipendu Saha

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Use of continuous and grab sample data for calculating total maximum daily load (TMDL) in agricultural watersheds, Shelly Gulati, Ashley A. Stubblefield, Jeremy S. Hanlon, C. L. Spier, and William T. Stringfellow

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Design Studies of Swept Wind Turbine Blades, Scott M. Larwood, C. P. Van Dam, and Daniel Schow

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Noninvasive assessment of cardiac abnormalities in experimental autoimmune myocarditis by magnetic resonance microscopy imaging in the mouse., Chandirasegaran Massilamany, Vahid Khalilzad-Sharghi, Arunakumar Gangaplara, David Steffen, Shadi F. Othman, and Jay Reddy

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Plane strain versus axisymmetric modeling of convex levees, Scott Merry and Rongqiang Du

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A regression-based performance prediction framework for synchronous iterative algorithms on general purpose graphical processing unit clusters, Vivek K. Pallipuram, Melissa C. Smith, Nimisha Raut, and Xiaoyu Ren

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Serious Fun: Using toys to demonstrate fluid mechanics principles, Camilla M. Saviz and Said Shakerin

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Perceptually Salient Haptic Rendering for Enhancing Kinesthetic Perception in Virtual Environments, Ravikiran B. Singapogu, Christopher C. Pagano, Timothy C. Burg, Paul G. Dorn, Ron Zacharia, and Dongbin Lee

Submissions from 2013

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Long-term in vivo imaging of viscoelastic properties of the mouse brain after controlled cortical impact., Thomas Boulet, Matthew L. Kelso, and Shadi F. Othman

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Impact of co-digestion on existing salt and nutrient mass balances for a full-scale dairy energy project, Mary Kay Camarillo, William T. Stringfellow, J. S. Hanlon, J. K. Domen, and C. L. Spier

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Economic sustainability of a biomass energy project located at a dairy in California, USA, Mary Kay Camarillo, William T. Stringfellow, J. S. Hanlon, and M. B. Jue

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Investigation of selective catalytic reduction for control of nitrogen oxides in full-scale dairy energy production, Mary Kay Camarillo, William T. Stringfellow, J. S. Hanlon, and K. Watson

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Near-infrared optical imaging for monitoring the regeneration of osteogenic tissue-engineered constructs., Elizabeth A. Cowles, Joy L. Kovar, Evan T. Curtis, Huihui Xu, and Shadi F. Othman

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Reduction of Porcine Parvovirus Infectivity in the Presence of Protecting Osmolytes, Maria Gencoglu, Caryn Heldt, and Saagar Vijayaragavan

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Characterization of IRDye 800CW chlorotoxin as a targeting agent for brain tumors., Joy L. Kovar, Evan Curtis, Shadi F. Othman, Melanie A. Simpson, and D. Michael Olive

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Dynamic analysis tool development for swept wind turbine blades, Scott M. Larwood and C. P. Van Dam

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The July 10 2000 Payatas Landfill Slope Failure, Scott Merry, Edward Kavazanjian, and Wolfgang Fritz

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Pseudomorphic Growth of InAs on Misoriented GaAs for Extending Quantum Cascade Laser Wavelength, David Mueller, Gregory E. Triplett, Charles Meyer, Emily Cheng, Justin Grayer, Denzil Roberts, and Samuel Graham

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Comparison of the technical potential for hydrogen, battery electric, and conventional light-duty vehicles to reduce greenhouse gas emissions and petroleum consumption in the United States, David S. Reichmuth, Andrew E. Lutz, Dawn K. Manley, and Jay O. Keller

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Helicopter toy and lift estimation, Said Shakerin

Photogenic Fluids, Said Shakerin

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Physics Trick - Balanced can, Said Shakerin

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Similarity-Based 3D Atmospheric Nucleation Data Visualization and Analysis, Kai Zhu, Yanrui Liu, Aseda Gyeke Aboagye, Huaguang Song, and Jinzhu Gao

Submissions from 2012

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Magnetic resonance elastography methodology for the evaluation of tissue engineered construct growth., Evan Curtis, Simeng Zhang, Vahid Khalilzad-Sharghi, Thomas Boulet, and Shadi F. Othman

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Formal Service Learning Opportunities: Engineering Internships in Social Entrepreneurship Organizations, Abel A. Fernandez, C. Saviz, and E. Basha

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B- and D-meson decay constants from three-flavor lattice QCD, James E. Hetrick and A. Bazavov

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Balancing fatigue damage and turbine performance through innovative pitch control algorithm, Scott Johnson, Scott M. Larwood, Gerald McNerney, and C. P. Van Dam

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Nonlinear Dynamic Model-based Adaptive Control of a Solenoid-Valve System, Dongbin Lee, C. Nataraj, and P. Naseradinmousavi

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Sensitivity of Strained and Unstrained Structure Growth on GaAs (111)B, David Mueller, Denzil Roberts, and Gregory Ttriplett

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MR elastography monitoring of tissue-engineered constructs., Shadi F. Othman, Evan Curtis, Sarah A. Plautz, Angela K. Pannier, Stephanie D. Butler, and Huihui Xu

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Macular thickness as determined by optical coherence tomography in relation to degree of myopia, axial length and vitreous chamber depth in Malay subjects., Shadi F. Othman, Sharanjeet-Kaur, Faudziah Abd Manan, Ahmad Iskandar Zulkarnain, Zainal Mohamad, and Azrin E. Ariffin

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A comparative study of GPU programming models and architectures using neural networks, Vivek K. Pallipuram, Mohammad A. Bhuiyan, and Melissa C. Smith

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Curcumin-loaded magnetic nanoparticles for breast cancer therapeutics and imaging applications., Murali M. Yallapu, Shadi F. Othman, Evan Curtis, Nichole A. Bauer, Neeraj Chauhan, Deepak Kumar, Meena Jaggi, and Subhash C. Chauhan

Submissions from 2011

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Performance, optimization, and fitness: Connecting applications to architectures, Mohammad A. Bhuiyan, Melissa C. Smith, and Vivek K. Pallipuram

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Microscopic magnetic resonance elastography of traumatic brain injury model., Thomas Boulet, Matthew L. Kelso, and Shadi F. Othman

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Modeling the inactivation of microorganisms occluded in effluent wastewater particles to enhance operation of filtration and disinfection systems, Mary Kay Camarillo, F. J. Loge, J. L. Darby, T. R. Ginn, and H. Basagaoglu

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Lotus effect toy, Said Shakerin

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Multi-functional magnetic nanoparticles for magnetic resonance imaging and cancer therapy., Murali M. Yallapu, Shadi F. Othman, Evan Curtis, Brij K. Gupta, Meena Jaggi, and Subhash C. Chauhan

Submissions from 2010

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Student-led podcasting for engineering education, E. Alpay and Shelly Gulati

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A model to quantify removal and inactivation of microorganisms occluded in effluent wastewater particles using filtration and disinfection systems, Mary Kay Camarillo, F. J. Loge, and J. L. Darby

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Optimizing filtration and disinfection systems with a risk-based approach, Mary Kay Camarillo, F. J. Loge, J. L. Darby, and T. R. Ginn

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Developing a Web-based Collaborative Research Environment for Undergraduates, Jinzhu Gao

Promoting Technology-assisted Active Learning in CSE, Jinzhu Gao and Jace Hargis

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Elastic secondary flows in sharp 90 degree micro-bends: a comparison of PEO and DNA solutions, Shelly Gulati, C. S. Dutcher, Dorian Liepmann, and Susan J. Muller

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Nonperturbative QCD simulations with 2+1 flavors of improved staggered quarks, James E. Hetrick and A. Bazavov

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Topological susceptibility with the asqtad action, James E. Hetrick and A. Bazavov

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Implementation of structural control measures to mitigate avalanche hazard along transportation corridors, Joshua T. Hewes, Rand Decker, Scott M. Merry, and Jamie Yount

Rube and His Impact, Said Shakerin

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Vortex apparatus and demonstrations, Said Shakerin

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Analysis of a distributed grid-connected fuel cell during fault conditions, Emma M. Stewart, R. Tumilty, John Fletcher, Andrew E. Lutz, G. Ault, and Jim McDonald

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Thermodynamic analysis of fermentation and anaerobic growth of baker's yeast for ethanol production, Kwee Yan Teh and Andrew E. Lutz

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Rapid cell extraction in aqueous two-phase microdroplet systems, Kalpana Vijayakumar, Shelly Gulati, Andrew J. de Mello, and Joshua B. Edel

Submissions from 2009

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Chemical imaging of microfluidic flows using ATR-FTIR spectroscopy, K. L. A. Chan, Shelly Gulati, Joshua B. Edel, and Andrew J. de Mello

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Web-based Visualization and Analysis of Atmospheric Nucleation Processes, Jinzhu Gao, Rui Ding, Yi Liu, Bin Chen, Xiaohui Cui, and J. Ilja Siepman

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Opportunities for microfluidic technologies in synthetic biology, Shelly Gulati, Vincent Rouilly, Xize Niu, James Chappell, Richard Kitney, Joshua B. Edel, Paul Freemont, and Andrew J. de Mello

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The B → πlν semileptonic form factor from three-flavor lattice QCD: A model-independent determination of |Vub|, James E. Hetrick and J. Bailey

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Investigation of river eutrophication as part of a low dissolved oxygen TMDL implementation, Gary M. Litton, W. T. Stringfellow, J. Herr, M. Brunell, and S. Borglin

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High-Speed and High-Accuracy Method of Mutual-Inductance Calculations, David Mueller and Thomas Engel

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Sub-2nm Size-Tunable High-Density Pt Nanoparticle Embedded Nonvolatile Memory, David Mueller, Minseong Yun, Maruf Hossain, and Veena Misra

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Modeling, analysis and control system development for the Italian hydrogen house, Emma M. Stewart, Andrew E. Lutz, S. Schoenung, M. Chiesa, J. O. Keller, J. Fletcher, G. Ault, J. McDonald, and A. Cruden

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Optimized Parallel Image Compositing and Remote Delivery with Linear Pipelining and Adaptive Transport, Qishi Wu, Jinzhu Gao, Zizhong Chen, and Mengxia Zhu

Submissions from 2008

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Fuel cells as distributed generation, A. Cruden, T. Houghton, S. Gair, M. Duerr, G. D. Agnew, E. M. Stewart, and Andrew E. Lutz

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Elastic secondary flows of semidilute DNA solutions in abrupt 90° microbends, Shelly Gulati, Dorian Liepmann, and Susan Muller

Elastic secondary flows of semidilute DNA solutions in abrupt 90° micro-bends, Shelly Gulati, Dorian Liepmann, and Susan J. Muller

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Direct measurements of viscoelastic flows in micro-contractions, Shelly Gulati, Susan J. Muller, and Dorian Liepmann

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Direct measurements of viscoelastic flows of DNA in a 2:1 abrupt planar micro-contraction, Shelly Gulati, Susan Muller, and Dorian Liepmann

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Pillar-induced droplet merging in microfluidic circuits, Xize Niu, Shelly Gulati, Joshua B. Edel, and Andrew J. de Mello

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Monitoring tissue engineering using magnetic resonance imaging., Huihui Xu, Shadi F. Othman, and Richard L. Magin

Submissions from 2007

Sophomore engineering design: back to the future, Jeffrey S. Burmeister, T. L. Foutz, and S. Thompson

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Homework habits – if it is broken, fix it, Jeffrey S. Burmeister, Camilla Saviz, and Abel Fernandez

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Traditional Foley drainage systems – do they drain the bladder?, Maurice M. Garcia, Shelly Gulati, Dorian Liepmann, G. Bennett Stackhouse, Kirsten Greene, and Marshall L. Stoller

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Traditional Foley drainage systems--do they drain the bladder?, Shelly Gulati, Maurice Garcia, Dorian Liepmann, Kristen Greene, and Marshall Stoller