A selection of journal articles written by faculty in the College of the Pacific - Department of Chemistry at University of the Pacific.

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Submissions from 2017

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Simulation of X-ray transient absorption for following vibrations in coherently ionized F2 molecules, Anthony D. Dutoi and Stephen Leone

Submissions from 2016

Isolation and Characterization of Two Polyphenols from Strawberries, Gurbir Gudial, Ilona Serebnitskaya, and Andreas H. Franz

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Oxidative esterification of primary alcohols with TEMPO/CaCl2/Oxone under hydrous conditions, Sven Hackbusch and Andreas H. Franz

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Differential secretion pathways of proteins fused to the Escherichia coli maltose binding protein (MBP) in Pichia pastoris, Pachai S. Moua, Alfonso Gonzalez, Kristin T. Oshiro, Vivian Tam, Zhiguo Harry Li, Jennifer Chang, Wilson Leung, Amy Yon, Der Thor, Sri Venkatram, Andreas H. Franz, Douglas D. Risser, Joan Lin-Cereghino, and Geoff P. Lin-Cereghino

Submissions from 2015

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Acylation of trans-2-substituted cyclohexanols: The impact of substituent variation on the pyridine-induced reversal of diastereoselectivity, Sven Hackbusch and Andreas H. Franz

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Efficient photochemical synthesis of peptide-α-phenylthioesters, Andrew Pardo, Tyrone J. Hogenauer, Zhefeng Cai, Julian A. Vellucci, Efrain M. Castillo, Carl W. Dirk, Andreas H. Franz, and Katja Michael

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A biomimetic approach for enhancing the in vivo half-life of peptides, Sravan C. Penchala, Mark R. Miller, Arindom Pal, Jin Dong, Nikhil R. Madadi, Jinghang Xie, Hyun Joo, Jerry Tsai, Patrick Batoon, Vyacheslav V. Samoshin, Andreas H. Franz, Trevor Cox, Jesse Miles, William K. Chan, Miki S. Park, and Mamoun M. Alhamadsheh

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Advances in molecular quantum chemistry contained in the Q-Chem 4 program package, Yihan Shao, Zhengting Gan, Evgeny Epifanovsky, Michael Wormit, Joerg Kussmann, Adrian Lange, Andrew Behn, Jia Deng, Xintian Feng, Debashree Ghosh, Matthew Goldey, Paul R. Horn, Leif D. Jacobson, Ilya Kaliman, Rustam Z. Khaliullin, Tomasz Kus, Arie Landau, Jie Liu, Emil I. Proynov, Young Min Rhee, Ryan M. Richard, Mary A. Rohrdanz, Ryan P. Steele, Eric J. Sundstrom, H. Lee Woodcock III, Paul M. Zimmerman, Dmitry Zuev, Ben Albrecht, Ethan Alguire, Brian Austin, Gregory J. O. Beran, Yves A. Bernard, Eric Berquist, Kai Brandhorst, Ksenia B. Bravaya, Shawn T. Brown, David Casanova, Chun-Min Chang, Yunqing Chen, Siu Hung Chien, Kristina D. Closser, Deborah L. Crittenden, Michael Diedenhofen, Robert A. DiStasio Jr., Hainam Do, and Anthony Dutoi

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trans-2-Aminocyclohexanol-based amphiphiles as highly efficient helper lipids for gene delivery by lipoplexes, Yu Zheng, Xin Liu, Nataliya M. Samoshina, Vyacheslav V. Samoshin, Andreas H. Franz, and Xin Guo

Submissions from 2014

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Convenient synthesis of 1,3-dithiolane-2-thiones: cyclic trithiocarbonates as conformational locks, Irina A. Dotsenko, Qinliang Zhao, Andreas H. Franz, Patrick Batoon, Nataliya M. Samoshina, and Vyacheslav V. Samoshin

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Visualising many-body electron dynamics using one-body densities and orbitals, Anthony D. Dutoi

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Time-resolved pump-probe spectroscopy to follow valence electronic motion in molecules: Application, Anthony D. Dutoi and Lorenz Cederbaum

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Structure assignment and H/D-exchange behavior of several glycosylated polyphenols, Andreas H. Franz, Ilona Serebnitskaya, Gurbir Gudial, and Christopher Wallis

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Thio-β-D-glucosides: synthesis and evaluation as glycosidase inhibitors and activators, Andrey V. Samoshin, Irina A. Dotsenko, Nataliya M. Samoshina, Andreas H. Franz, and Vyacheslav V. Samoshin

Examples of Amine-Induced Reversal of Diastereoselectivity during Acylation of trans-1,2-Substituted Cyclohexanols, Amelia Watson, Sven Hackbusch, Vyacheslav V. Samoshin, and Andreas H. Franz

Submissions from 2013

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Time-resolved pump-probe spectroscopy to follow valence electronic motion in molecules: Theory, Anthony D. Dutoi, Kirill Gokhberg, and Lorenz Cederbaum

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Attenuated second-order Møller–Plesset perturbation theory: performance within the aug-cc-pVTZ basis, Matthew Goldey, Anthony D. Dutoi, and Martin Head-Gordon

Submissions from 2012

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Time-resolved Pump-Probe Spectroscopy to Follow Valence Electron Motion, Anthony D. Dutoi, Kirill Gokhberg, and Lorenz Cederbaum

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The first example of amine-induced reversal of diastereoselectivity in acylation of some trans-2-substituted cyclohexanols, Andrey V. Samoshin, Jasper Visser, Matthew Curtis, Vyacheslav V. Samoshin, and Andreas H. Franz

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Analysis of the 5' untranslated region (5'UTR) of the alcohol oxidase 1 (AOX1) gene in recombinant protein expression in Pichia pastoris, Chris A. Staley, Amy Huang, Maria Nattestad, Kristin T. Oshiro, Laura E. Ray, Tejas Mulye, Zhiguo Harry Li, Thu Le, Justin J. Stephens, Seth R. Gomez, Allison D. Moy, Jackson C. Nguyen, Andreas H. Franz, Joan Lin-Cereghino, and Geoff P. Lin-Cereghino

Fliposomes: pH-controlled release from liposomes containing new trans-2-morpholinocyclohexanol-based amphiphiles that perform a conformational flip and trigger an instant cargo release upon acidification, Yu Zheng, Xin Liu, Nataliya M. Samoshina, Vyacheslav A. Chertkov, Andreas H. Franz, Xin Guo, and Vyacheslav V. Samoshin

Submissions from 2011

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An Excited Electron Avoiding a Positive Charge, Anthony D. Dutoi and Lorenz Cederbaum

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Ultrafast charge separation driven by differential particle and hole mobilities., Anthony D. Dutoi, Michael Wormit, and Lorenz Cederbaum

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Synthesis of nucleobase-calix[4]arenes via click chemistry and evaluation of their complexation with alkali metal ions and molecular assembly, Wanbo Liu, Mikael A. Minier, Andreas H. Franz, Matthew Curtis, and Liang Xue

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Fliposomes: pH-sensitive liposomes containing a trans-2-morpholinocyclohexanol-based lipid that performs a conformational flip and triggers an instant cargo release in acidic medium, Nataliya M. Samoshina, Xin Liu, Barbora Brazdova, Andreas H. Franz, Vyacheslav V. Samoshin, and Xin Guo

Submissions from 2010

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An Additive Long-range Potential to Correct for the Charge-transfer Failure of Time-dependent Density Functional Theory, Andreas Dreuw, Jürgen Plötner, Michael Wormit, Martin Head-Gordon, and Anthony D. Dutoi

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Tracing molecular electronic excitation dynamics in real time and space., Anthony D. Dutoi, Lorenz Cederbaum, Michael Wormit, Jan Starcke, and Andreas Dreuw

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Regioselective Bromination of a Thymine-Acridine Conjugate by N-Bromosuccinimide, Wanbo Liu, Engelbert Navarro, Andreas H. Franz, and Liang Xue

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Secretion and proteolysis of heterologous proteins fused to the Escherichia coli maltose binding protein, Zhiguo Li, Wilson Leung, Amy Yon, John Nguyen, Vincent C. Perez, Jane Vu, William Giang, Linda T. Luong, Tracy Phan, Kate A. Salazar, Seth R. Gomez, Colin Au, Fan Xiang, David W. Thomas, Andreas H. Franz, Joan Lin-Cereghino, and Geoff P. Lin-Cereghino

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An improved method for enhanced production and biological activity of human secretory leukocyte protease inhibitor (SLPI) in Pichia pastoris, Zhiguo Li, Allison Moy, Seth R. Gomez, Andreas H. Franz, Joan Lin-Cereghino, and Geoff P. Lin-Cereghino

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Origin and Implication of Ellipticity in High-order Harmonic Generation from Aligned Molecules, S. Ramakrishna, P. A. J. Sherrat, Anthony D. Dutoi, and Tamar Seidman

Submissions from 2009

Tumor-targeted drug delivery by folate conjugated amphiphiles, Shiladitya Bhattacharya; William K. Chan; Andreas H, Franz; Xiaoling Li; and Bhaskara R. Jasti

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Expression and characterization of recombinant human secretory leukocyte protease inhibitor (SLPI) protein from Pichia pastoris, Zhiguo Li, Allison Moy, Kirti Sohal, Carolyn Dam, Peter Kuo, James Whittaker, Mei Whittaker, Nejat Düzgünes, Krystyna Konopka, Andreas H. Franz, Joan Lin-Cereghino, and Geoff P. Lin-Cereghino

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The Exchange Energy of a Uniform Electron Gas Experiencing a New, Flexible Range Separation, John A. Parkhill, Jeng-Da Chai, Anthony D. Dutoi, and Martin Head-Gordon

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Gas-phase scrambling of disulfide bonds during matrix-assisted laser desorption/ionization mass spectrometry analysis, Liang Zhao, Ruben T. Almaraz, Fan Xiang, Jerry L. Hendrick, and Andreas H. Franz

Submissions from 2008

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Synthesis of folate-conjugated amphiphiles for tumor-targeted drug delivery, Shiladitya Bhattacharya, Andreas H. Franz, Xiaoling Li, and Bhaskara R. Jasti

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Synthesis and characterization of biotin derivatives as multifunctional oligosaccharide tags, Nandkishor S. Chindarkar and Andreas H. Franz

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A study of the effect of attenuation curvature on molecular correlation energies by introducing an explicit cutoff radius into two-electron integrals., Anthony D. Dutoi and Martin Head-Gordon

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Syntheses of small cluster oligosaccharide mimetics, Andreas H. Franz, Paul H. Gross, and Vyacheslav V. Samoshin

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Corrigendum to “The disulfide bond pattern of salmon egg lectin 24 K from the Chinook salmon Oncorhynchus tshawytscha” [Arch. Biochem. Biophys. 463 (2007) 1–11], Haiqiang Yu, Kenji Murata, Jerry L. Hedrick, Fan Xiang, Andreas H. Franz, and Ruben T. Almaraz

Submissions from 2007

trans-2-Alkylaminocyclohexanols as pH-triggered molecular switches, Barbora Brazdova, Yuen S. Wong, Sombo Koo, Andrey V. Samoshin, Andreas H. Franz, and Vyacheslav V. Samoshin

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Synthesis of anomerically pure, furanose-free benzyl-2-amino-2-deoxy-mannuronic acid derivatives, Tony M. K. Chiu, Katina Sigillo, Paul H. Gross, and Andreas H. Franz

Oligosaccharides labeled with new small-molecule tags, Olga Goltvyanitsa, Nandkishor S. Chindarkar, and Andreas H. Franz

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Solution conformations of three small cluster oligosaccharide mimetics (SCOM) from D-glucosamine, D-altrosamine, and (-)-quinic acid, Q. L. Nguyen, L. Olmstead, S. Bains, and Andreas H. Franz

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Deglycosylated anti-amyloid beta antibodies induce amyloid beta sequestration with reduced microglial phagocytosis and cytokine release, Kazuyuki Takata, Chiho Hirata-Fukae, Amanda G. Becker, Saori Chishiro, Audrey J. Gray, Kouhei Nishitomi, Andreas H. Franz, Gaku Sakaguchi, Akira Kato, Mark P. Mattson, Frank M. LaFerla, Paul S. Aisen, Yoshihisa Kitamura, and Yasuji Matsuoka

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The disulfide bond pattern of Salmon Egg Lectin 24K from the Chinook salmon Oncorhynchus tshawytscha, Haiqiang Yu, Kenji Murata, Jerry L. Hedrick, Ruben T. Almaraz, Fan Xiang, and Andreas H. Franz

Submissions from 2006

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Tris(1,9-diethyladeninium) triiodide diiodide, Elizabeth F. Day, Norman S. Dean, and Andreas H. Franz

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Self-interaction Error of Local Density Functionals for Alkali-halide Dissociation, Anthony D. Dutoi and Martin Head-Gordon

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MALDI-TOF and ESI-MS Analysis of Oligosaccharides Labeled with a New Multifunctional Oligosaccharide Tag, Joanne Hsu, Soo Jin Chang, and Andreas H. Franz

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Advances in methods and algorithms in a modern quantum chemistry program package, Yihan Shao, Laszlo Molnar, Yousung Jung, Jörg Kussmann, Christian Ochsenfeld, Shawn Brown, Andrew Gilbert, Lyudmila Slipchenko, Sergey Levchenko, and Darragh O’Neill

Submissions from 2005

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Simulated Quantum Computation of Molecular Energies, Alan Aspuru-Guzik, Anthony D. Dutoi, Peter Love, and Martin Head-Gordon

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Understanding Mass Spectra: A Basic Approach (Book review), R. Martin Smith, Wiley & Sons, Inc., 2004, ISBN:0-471-42949-X, Andreas H. Franz

Synthesis and Conformational Study of Per-O-Acetylated 1-Cyano-1-Deoxy Derivatives from L-Fucose and D-Galactose, Laura Jordan, Thuy Trang M. Nguyen, Joshua Pwu, and Andreas H. Franz

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Accurate Local Approximations to the Triples Correlation Energy: Formulation, Implementation and Tests of 5th-order Scaling Models, Paul E. Maslan, Anthony D. Dutoi, Michael S. Lee, Yihan Shao, and Martin Head-Gordon

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Synthesis and NMR-Characterization of Three Quinamide-Based Disaccharide Mimetics with Unusual Cyclohexane twist-Conformation, Thuy Trang M. Nguyen, Paul H. Gross, and Andreas H. Franz

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Fast, Localized, Orthonormal Virtual Orbitals which Depend Smoothly on Nuclear Coordinates, Joseph E. Subotnik, Anthony D. Dutoi, and Martin Head-Gordon

Submissions from 2004

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An Orbital-Based Definition of Radical and Multiradical Character, Anthony D. Dutoi, Yousung Jung, and Martin Head-Gordon

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Scaled Opposite-spin Second-order M ller-Plesset Correlation Energy: An Economical Electronic Structure Method, Yousung Jung, Rohini C. Lochan, Anthony D. Dutoi, and Martin Head-Gordon

Calix[6]arene Derivatives Show Gas-Phase Complexation of Amino Acids in Electrospray Ionization Mass Spectrometry (ESI-MS), Joshua Pwu and Andreas H. Franz

Submissions from 2003

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Improved Capillary Electrophoresis Separation and MS Detection of Oligosaccharides, Hyun Joo An, Andreas H. Franz, and Carlito B. Lebrilla

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High-Throughput One-Bead-One-Compound Approach to Peptide-Encoded Combinatorial Libraries: MALDI-MS Analysis of Single TentaGelTM Beads, Andreas H. Franz, Ruiwu Liu, Aimin Song, Kit S. Lam, and Carlito B. Lebrilla

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C-H-Deprotonation Mediated by a Remote syn-Axial Acetoxy group – An unprecedented Double Bond Formation upon Cyanation of the Dimer from L-Fucal, Andreas H. Franz, Vyacheslav V. Samoshin, Chris Myers, Allen D. Hunter, and Paul H. Gross

Submissions from 2002

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Evidence for Long-Range Glycosyl Transfer Reactions in the Gas Phase, Andreas H. Franz and Carlito B. Lebrilla

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Mild synthesis of disaccharidic 2,3-enopyranosyl cyanides and 2-C-2-deoxy pyranosyl cyanides with Hg(CN)2/HgBr2/TMSCN, Andreas H. Franz, YiQiu Wei, Vyacheslav V. Samoshin, and Paul H. Gross

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Synthesis and End Group Structure of 2-Deoxydextrans Prepared via the Cationic Ring-Opening Polymerization (CROP) of an Anhydrosugar, Yu-zeng Liang, Andreas H. Franz, Chrisana Newbury, Carlito B. Lebrilla, and Timothy E. Patten

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Non-covalent calixarene–amino acid complexes formed by MALDI-MS, Michele M. Stone, Andreas H. Franz, and Carlito B. Lebrilla

Submissions from 2001

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Theoretical Investigations of Proton-bound Cluster Ions, P. Botschwina, Anthony D. Dutoi, M. Mladenovic, R. Oswald, S. Schmatz, and H. Stoll

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MALDI-FTMS Characterization of Oligosaccharides Labeled with 9-Aminofluorene, Andreas H. Franz, Tadeusz F. Molinski, and Carlito B. Lebrilla

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Geometry of Simple Molecules: Nonbonded Interactions and Not-bonding Orbitals Primarily Determine Observed Geometries, Ronald F. See, Anthony D. Dutoi, K. W. McConnell, and R. M. Naylor

Submissions from 1999

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Structure and conformation of tri-O-acetyl-D-glucal dimer in solid state and in solution, Andreas H. Franz, Viktor V. Zhdankin, Vyacheslav V. Samoshin, Michael J. Minch, Victor G. Young Jr., and Paul H. Gross

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Etoposide. Conformational and Hydration Features, Kangling Zhang, Andreas H. Franz, G. Craig Hill, C. Michael McCallum, and Michael J. Minch

Submissions from 1998

13C-13C Couplings in Doubly Labeled Ferrier Dimers, Andreas H, Franz; Paul H. Gross; and Michael J. Minch

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The Crystal Structures of (p-ClPh)3PO and (p-OMePh)3PO, Including an Analysis of the P-O Bond in Triarylphosphine Oxides, Ronald F. See, Anthony D. Dutoi, James C. Fettinger, Peter J. Nicastro, and Joseph W. Ziller

Submissions from 1997

GLYCALS II. Synthesis and Derivatization of C-Disaccharides from D-Glucal, D-Galactal and L-Fucal by “Ferrier Dimerization”, Andreas H. Franz and Paul H. Gross

NOE-Difference Experiments on Rotationally Biased Ferrier-Dimers, Michael J. Minch, Andreas H. Franz, and Paul H. Gross